Ask your mom to take you to the doctor. No, this is not because you had sex. The doctor visit will be kept private (at least if you live in the U.S., I'm not sure about other countries, check on that). You can tell the doctor anything and he or she cannot tell you mom.
At the very least, you should start getting gynecological exams after you have sex and you can get birth control, as well.
I don't think it's anything serious, but since it's bothering you so much, go to the doctor.