There is no data stating whether or not skipping many periods is bad for you. However, as it is a natural cycle of the woman's body, at least 4 a year is probably the lowest you shoudl go.One of the depo shots lasts 6 months, but 2 periods a year just seems too few.
Since you are on a pill that is the same amount of horomone each day, you should be able to skip. This may cause spotting all month long however, which would of course defeat the whole purpose.