I had the same discharge, when I was having sex with my boyfriend I noticed an odor and when I went to the bathroom I had a yellowish/brownish discharge. It only lasted about a day and when I went to the doctor they said I had a slight yeast infection, but no bacterial infections and I got checked for chlamydia and gonerrhea and they were all negative. The same thing happened a couple of months later too, and the doctor said that it could either be from having unprotected sex, because the two fluids might not mix well together, lol, or from missing a pill. And I did miss a pill the first time it happened, and the second time I was a few hours late. I've now been taking my pills regularly and haven't had the problem again. However, this month I noticed a slight brown discharge right before I was supposed to get my period, but no odor, I got my period and now i'm still having it a little, I don't know if this is considered breakthrough bleeding or if it's just my period. If someone can help me with that i'd appreciate it