Never had it before...But when I was a kid, we had to close our private well because the state tested it and found bacteria that could have only come from fecal matter!
My parents had to dig (324 ft down) a new well through a drilling company. Until it was dug, we had to boil all our water...Even to take a bath!
I know this doesn't really answer your question...Other then to say that I am sure it is possible for fecal matter to contaminate water given the right circumstances. Is this what happened here? No idea, but I do know most states offer free or cheap testing of drinking water on private wells.
Cheerio,
ladybrannon