Welcome to e health forum.
You need not worry about the enlarged lymph nodes. They will subside on their own without any interventions.
The description of your pain appears to be due to renal stones. Pain that originates due to renal issues (Stones, infection) is usually episodic , spasmodic or colicky in nature, originating in the flank and radiating to the lower belly, inner thigh. It is associated with other symptoms like nausea, vomiting and systemic features due to any infection.
The exact cause of your symptoms need to be ruled out with a ultrasound or a CT scan of the abdomen. The results of a Urinalysis, might also give a clue to the probable cause.
Hence you might consult with your doctor for a proper physical examination, above mentioned tests and proper therapeutic advice.
I hope this helps.