People, both men and women, hundreds of thousands of them are swallowing semen every day!
I think if there was something harmful about it we certainly would have heard about it before now...
Swallowing semen isn't to everyone's taste and many find just the thought of it revolting. Chance are your girlfriend got carried away and swallowed and now wishes she hadn't...
If you are in good health it is probable your girl's pains are stress related, especially if there are no other symptoms such as vomiting or the runs (stress can cause lots of things including stomach pains), however, even stress related pain should not be trivialised and as with any pain or illness that lasts a week and stays the same or gets worse, medical advice should be sought.
For most people, most of the time, stress related problems tend to subside without treatment after an explanation and reassurance from a medic. Of course the big problem is to be able to tell her doctor what she has done which might be too embarrassing so the practice nurse might be an alternative or the local family planning clinic would be a bit more anonymouse...
To answer your question: I have never heard of that happening before but I have heard of many who give it a try and are heartily sick for a time afterwards...