I had green stools once when I was having issues with my intestine. MY GOSH it was like bright green!! NOt a nice thing to see.
My dr, treated me for my intestine issues, and the green stools went away. He didnt seem to worried about the green though, I was more worried about it then he was. He just oh ya, wow it really is green ...um ya lol
But for sure I would just talk to your Dr about it, but I think deteragram is right that it most likly is harmless so dont stress over it, just ask the dr.