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Conjunctivitis from Chlamydia - experiences?

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Hello,
I have been detected with DNA test from eyes - Chlamydia Trahomatis positive. I don't have established infection in the body, no antibodies and the DNA test is negative.
Both eyes are inflamed and infected, but the one is more and it is a big problem. I'm treated with a topical antibiotic belonging to the quinolone - twice courses for 2 weeks. It is better but still the infection is not gone. Some of you have any experience? To continue now only local for 3th course or to be taken and internal antibiotics scheme and for how long?
Thank you!
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