Hi, and thanks for your query on eHealth forum!
The Treponema pallidum particle agglutination assay (TPPA) and Fluorescent treponemal antibody absorption (FTA-ABS) test if positive are diagnostic of syphilis. Since TPPA is negative, FTA-ABS can be done to confirm diagnosis. Both the tests can be sued to diagnose any stage of syphilis except the first 3-4 weeks when they are negative as sufficient antibodies have not formed.
Penile ulcers may be due to infective or non-infective causes. Infective causes are sexually transmitted and include syphilis, gonorrhea, chancroid, genital herpes, LGV and granuloma inguinale. Hence all these should also be tested for. Since a confirmed diagnosis cannot be given on net please consult your urologis/venerologist to find the cause. Hope this helps. Take care!