This is a common problem (I think) for people who spend a lot of time studying or doing a lot of desk work. The physical therapy worked. And chiro didn't but one of them said your hips are out of alignment. Here is what I think I know about your situation:
Understand this first. sitting for long periods of time will cause your Hamstrings to shorten (your hamstrings connect to your different areas in your pelvis). This will cause a cascading effect in that your back muscles will be pulled on. This will move your pelvis out of neutral position. Your quadraceps (thigh muscles) will lengthen and become stronger due to shorter hamstrings. As a result of any of the previous, your stomach muscles will contract. Any difference in strength in your quads, hamstrings, abs or back muscles will pull on your pelvis causing it to move out of "neutral" position. I know this because I have similar problems. I talked to my massage therapist and Chiropractor that is what they told me.
To remedy the situation you need to stretch. This is sometimes difficult. Do the following AND most importantly keep your back FLAT while doing this, don't hunch over:
Sit on the floor, in a butterfly position, feet touching, don't cross your legs, back flat.
Then extend one leg, keep your back flat and straighten your leg. Can you do this with your leg and back at a 90 degree angle? If not then try to do so but don't hurt yourself, please.
Repeat with the other leg.
Can you sit at a 90 degree angle (your legs stretched out and your back flat?) Buy a yoga strap to assist you if you want just don't push to hard or you may do more harm than good.
As a side note can I add you as a friend and give you a url where you can ask me any question you want?
Hope this helps,
MrBurton
P.S. Do buy an ice pack as this will help with the soreness. I use mine when I go to sleep. Avoid heat as this will only increase inflamation. For some reason people tell you to use heat then always finish with cold.